Type in the name of the INPUT DATA file:
  COORDINATES TAKEN FROM :
 RNA_DNA.FRC                                                                     

 Is the data file in the "BROOKHAVEN PDB" format?(Y/N)
     N

 If not, type in the input data format
 Field specific ations required: Atom Name, Res.Name, Res.No., XYZ Coords.
(T1,A4,T5,A3,T38,I2,T8,3F10.5)          

 TYPE UNIT CELL PARAMETERS: A,B,C AND ALPHA,BETA,GAMA

  UNIT CELL PARAMETERS :: A =   24.20 B =   43.46 C =   49.40
                      APLHA =   90.00 BETA =   90.00 GAMA =   90.00

 Is the molecule a double stranded helix? (Y/N)
     Y

 Are the residues numbered according to the Brookhaven format? (Y/N)
     Y

 Should the base-pair ORIGIN be at the Centre of Gravity?
 (NOT RECOMMENDED!! Default is midpoint of C6--C8:)(Y/N)
     N

 Should the Y-axis be along the line joining C1' atoms?
 (If "No",Y-axis is taken along the C6--C8 direction:)(Y/N)
     Y

 Are Single Strand Parameters required? (Y/N)
     Y

 Should the molecule be reoriented about a LINEAR GLOBAL Helix Axis? (Y/N)
     Y

 Should the GLOBAL AXIS be fitted to:
 1. Local HELIX ORIGINS (Type O)
 2. Base-Pair CENTERS (Type C)
 3. Any Backbone atom (Type the atom name)
     C1' 

 Results of the calculation are written into: 
 RNA_DNA.PRM                                                                     
 Reoriented atomic coordinates written into:
 RNA_DNA.COOR                                                                    

 Are P--P distances and Cylindrical Polar Coordinates required?(Y/N)
 Only meaningful for reoriented molecule.
     Y

 Is the torsion angle calculation required? (Y/N)
     Y