<?xml version="1.0" encoding="UTF-8"?>
<emdEntry accessCode="5542" version="1.9.6">
    <admin>
        <lastUpdate>2013-09-11</lastUpdate>
    </admin>
    <deposition>
        <status>REL</status>
        <depositionDate>2012-12-14</depositionDate>
        <depositionSite>RCSB</depositionSite>
        <processingSite>RCSB</processingSite>
        <headerReleaseDate>2012-12-26</headerReleaseDate>
        <mapReleaseDate>2013-07-17</mapReleaseDate>
        <inFrameEMDBId>EMD-5541, EMD-5543, EMD-5545, EMD-5546, EMD-5547, EMD-5548, EMD-5549, EMD-5550</inFrameEMDBId>
        <title>Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - low kinase activity state - tsr mutant P221D</title>
        <authors>Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ</authors>
        <keywords>chemotaxis, E.coli, CheA</keywords>
        <primaryReference published="true">
            <journalArticle>
                <authors>Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ</authors>
                <articleTitle>The mobility of two kinase domains in the Escherichia coli chemoreceptor array varies with signalling state.</articleTitle>
                <journal>MOL.MICROBIOL.</journal>
                <volume>89</volume>
                <firstPage>831</firstPage>
                <lastPage>841</lastPage>
                <year>2013</year>
                <externalReference type="pubmed">23802570</externalReference>
                <externalReference type="doi">doi:10.1111/mmi.12309</externalReference>
            </journalArticle>
        </primaryReference>
    </deposition>
    <map>
        <file format="CCP4" sizeKb="845" type="map">emd_5542.map.gz</file>
        <dataType>Image stored as Reals</dataType>
        <dimensions>
            <numColumns>60</numColumns>
            <numRows>60</numRows>
            <numSections>60</numSections>
        </dimensions>
        <origin>
            <originCol>0</originCol>
            <originRow>0</originRow>
            <originSec>0</originSec>
        </origin>
        <limit>
            <limitCol>59</limitCol>
            <limitRow>59</limitRow>
            <limitSec>59</limitSec>
        </limit>
        <spacing>
            <spacingCol>60</spacingCol>
            <spacingRow>60</spacingRow>
            <spacingSec>60</spacingSec>
        </spacing>
        <cell>
            <cellA units="A">386.4</cellA>
            <cellB units="A">386.4</cellB>
            <cellC units="A">386.4</cellC>
            <cellAlpha units="degrees">90.0</cellAlpha>
            <cellBeta units="degrees">90.0</cellBeta>
            <cellGamma units="degrees">90.0</cellGamma>
        </cell>
        <axisOrder>
            <axisOrderFast>X</axisOrderFast>
            <axisOrderMedium>Y</axisOrderMedium>
            <axisOrderSlow>Z</axisOrderSlow>
        </axisOrder>
        <statistics>
            <minimum>0E-8</minimum>
            <maximum>0.36071506</maximum>
            <average>0.22182390</average>
            <std>0.08268128</std>
        </statistics>
        <spaceGroupNumber>1</spaceGroupNumber>
        <details>::::EMDATABANK.org::::EMD-5542::::</details>
        <pixelSpacing>
            <pixelX units="A">6.44</pixelX>
            <pixelY units="A">6.44</pixelY>
            <pixelZ units="A">6.44</pixelZ>
        </pixelSpacing>
        <contourLevel source="author">0.275</contourLevel>
        <annotationDetails>Subvolume average of mutant receptor tsrP221D/CheA/CheW</annotationDetails>
    </map>
    <supplement>
        <maskSet/>
        <sliceSet/>
        <figureSet/>
        <fscSet/>
    </supplement>
    <sample>
        <numComponents>3</numComponents>
        <name>chemoreceptor array with mutant receptor tsr P221D</name>
        <sampleComponentList>
            <sampleComponent componentID="1">
                <entry>protein</entry>
                <sciName>tsr P221D</sciName>
                <protein>
                    <sciSpeciesName ncbiTaxId="562">Escherichia coli</sciSpeciesName>
                    <recombinantExpFlag>true</recombinantExpFlag>
                    <externalReferences/>
                    <natSource/>
                    <engSource>
                        <expSystem ncbiTaxId="562">Escherichia coli</expSystem>
                    </engSource>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="2">
                <entry>protein</entry>
                <sciName>CheW</sciName>
                <protein>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <sciSpeciesName ncbiTaxId="562">Escherichia coli</sciSpeciesName>
                    <externalReferences/>
                    <natSource/>
                    <engSource/>
                </protein>
            </sampleComponent>
            <sampleComponent componentID="3">
                <entry>protein</entry>
                <sciName>CheA</sciName>
                <protein>
                    <oligomericDetails>dimer</oligomericDetails>
                    <sciSpeciesName ncbiTaxId="562">Escherichia coli</sciSpeciesName>
                    <recombinantExpFlag>false</recombinantExpFlag>
                    <externalReferences/>
                    <natSource/>
                    <engSource/>
                </protein>
            </sampleComponent>
        </sampleComponentList>
    </sample>
    <experiment>
        <vitrification>
            <cryogenName>ETHANE-PROPANE MIXTURE</cryogenName>
            <humidity>100</humidity>
            <instrument>FEI VITROBOT MARK III</instrument>
        </vitrification>
        <imaging>
            <electronSource>FIELD EMISSION GUN</electronSource>
            <electronDose units="e/A**2">150</electronDose>
            <energyFilter>FEI</energyFilter>
            <imagingMode>BRIGHT FIELD</imagingMode>
            <nominalDefocusMin units="nm">10000</nominalDefocusMin>
            <illuminationMode>FLOOD BEAM</illuminationMode>
            <nominalCs units="mm">2.2</nominalCs>
            <tiltAngleMin units="degrees">-66.93</tiltAngleMin>
            <tiltAngleMax units="degrees">59.52</tiltAngleMax>
            <microscope>FEI POLARA 300</microscope>
            <date>18-AUG-2011</date>
            <specimenHolderModel>OTHER</specimenHolderModel>
            <acceleratingVoltage units="kV">300</acceleratingVoltage>
            <nominalMagnification>34000</nominalMagnification>
            <energyWindow units="eV">0-20</energyWindow>
        </imaging>
        <imageAcquisition/>
        <fitting/>
        <specimenPreparation>
            <specimenSupportDetails>R 2/2 copper/rhodium grids, glow discharged</specimenSupportDetails>
            <buffer>
                <details>Tryptone Broth (10 g/L Tryptone, 5 g/L NaCl). Cells were incubated with penicillin for 1 hour prior to freezing.</details>
            </buffer>
        </specimenPreparation>
    </experiment>
    <processing>
        <method>subtomogramAveraging</method>
        <reconstruction>
            <software>IMOD, tomo3D</software>
            <ctfCorrection>IMOD</ctfCorrection>
            <resolutionByAuthor>25</resolutionByAuthor>
        </reconstruction>
        <subtomogramAveraging>
            <details>CTF-corrected. Average number of tilts used in the 3D reconstructions: 128. Average tomographic tilt angle increment: 1.</details>
        </subtomogramAveraging>
    </processing>
</emdEntry>
