REL PDBe PDBe PDBe 2006-07-10 2006-07-10 2007-05-02 2014-04-16 Infectious bursal disease virus capsid assembly and maturation by structural rearrangements of a transient molecular switch. Luque D Saugar I Rodriguez JF Verdaguer N Garriga D San Martin C Velazquez-Muriel JA Trus BL Carrascosa JL Caston JR Luque D Saugar I Rodriguez JF Verdaguer N Garriga D Martin CS Velazquez-Muriel JA Trus BL Carrascosa JL Caston JR Infectious bursal disease virus capsid assembly and maturation by structural rearrangements of a transient molecular switch. J.VIROL. 81 6869 6878 2007 17442720 doi:10.1128/JVI.00077-07 Infectious Bursal Disease Virus Subviral Particle Infectious Bursal Disease Virus Subviral Particle 60 copies of VP2 arranged in 20 trimers 1 2.8 Infectious bursal disease virus
IBDV Capsid Protein
Infectious bursal disease virus Gallus gallus VERTEBRATES 2.880 IBDV Subviral particle 260 1 VIRUS-LIKE PARTICLE STRAIN false true Gumboro virus, subviral particle singleParticle particle 6.2
25 mM PIPES, 150 mM NaCl, and 20 mM CaCl2
 NEGATIVE
Samples containing were applied to one side of a holey carbon film, washed twice on water drops, blotted, and plunged into a liquid ethane bath following standard procedures
300 mesh holey carbon film
 ETHANE FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 GATAN LIQUID NITROGEN ZEISS SCAI 7 23 8. Eucentric
Each particle
 I OTHER 7.2 FSC 0.33 CUT-OFF em3dr2
Resolution for SVP was also evaluated by FSC calculated between the full-dataset map and the SVP atomic map and for a correlation limit of 0.3, this was at 6.6 A.
23754 emd_1237.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 243 243 243 -121 -121 -121 243 243 243 340.2 340.2 340.2 90 90 90 X Y Z -2.20102 3.09582 0.00422405 0.263223 1.4 1.4 1.4 0.338 Density map of the T=1 Infectious Bursal Disease Virus (IBDV) Subviral Particle (SVP)2X2Y2Z oriented.
::::EMDATABANK.org::::EMD-1237::::
 1WCD RIGID BODY FIT SITUS and URO
Protocol: Rigid body. Refinement was done in both Real and Fourier Sapce
CC and R-factor REAL 2gsy RIGID BODY FIT SITUS and URO
Protocol: Rigid body. Refinement was done in both Real and Fourier Sapce
CC and R-factor REAL