<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2575" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-02-12</deposition>
         <header_release>2014-03-12</header_release>
         <map_release>2014-06-11</map_release>
         <update>2014-06-11</update>
      </key_dates>
      <title>SA11 Rotavirus non-trypsinized Triple Layered Particle grown in absence of leupetin</title>
      <authors_list>
         <author>Rodriguez JM</author>
         <author>Chichon FJ</author>
         <author>Martin-Forero E</author>
         <author>Gonzalez-Camacho F</author>
         <author>Carrascosa JL</author>
         <author>Caston JR</author>
         <author>Luque D</author>
      </authors_list>
      <keywords>virus assembly, rotavirus, Proteolysis</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Rodriguez JM</author>
               <author order="2">Chichon FJ</author>
               <author order="3">Martin-Forero E</author>
               <author order="4">Gonzalez-Camacho F</author>
               <author order="5">Carrascosa JL</author>
               <author order="6">Caston JR</author>
               <author order="7">Luque D</author>
               <title>New insights into rotavirus entry machinery: Stabilization of rotavirus spike conformation is independent of trypsin cleavage</title>
               <journal>PLOS PATHOG.</journal>
               <volume>10</volume>
               <first_page>e1004157</first_page>
               <last_page>e1004157</last_page>
               <year>2014</year>
               <external_references type="PUBMED">24873828</external_references>
               <external_references type="DOI">doi:10.1371/journal.ppat.1004157</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Non-trypsinized Triple Layered Particle from SA11 strain rotavirus grown in absence of leupeptin</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Non-trypsinized Triple Layered Particle from SA11 strain rotavirus grown in absence of leupeptin</name>
            <oligomeric_state>icosahedral</oligomeric_state>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name>Simian rotavirus A/SA11</name>
            <sci_species_name ncbi="10923">Simian rotavirus A/SA11</sci_species_name>
            <sci_species_strain>SA11</sci_species_strain>
            <natural_host database="NCBI">
               <organism ncbi="314293">Simiiformes</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_type>VIRION</virus_type>
            <virus_isolate>STRAIN</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.4</ph>
                  <details>Tris 25 mM, Na2HPO3 0.7 mM, NaCl 136.9 mM, KCl 5.1 mM, Glucose 5.6 mM, MgCl2 1 mM, CaCl2 1 mM</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Samples were applied to grids, blotted and plunged into liquid ethane</details>
               </staining>
               <grid>
                  <details>R 2/2 Quantifoil grids</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2.26</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.75</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.5</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>50000.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <date>2012-05-01</date>
               <image_recording_list>
                  <image_recording>
                     <digitization_details>
                        <sampling_interval units="&#181;m">15</sampling_interval>
                     </digitization_details>
                     <number_real_images>91</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>Eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Phase flipping &amp; amplitude decay</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">15.9</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Xmipp</name>
                  </software>
               </software_list>
               <number_images_used>1935</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="375282">
      <file>emd_2575.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>458</col>
         <row>458</row>
         <sec>458</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>458</x>
         <y>458</y>
         <z>458</z>
      </spacing>
      <cell>
         <a units="&#8491;">989.28</a>
         <b units="&#8491;">989.28</b>
         <c units="&#8491;">989.28</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-5.60418606</minimum>
         <maximum>5.67105913</maximum>
         <average>0.11967961</average>
         <std>0.95333248</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.16</x>
         <y units="&#8491;">2.16</y>
         <z units="&#8491;">2.16</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>1.05</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>3DR of non-tripsinized SA11 strain rotavirus TLP without leupeptin</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2575::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_2575.jpg</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>