<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_11_0/emdb.xsd" version="3.0.11.0" emdb_id="EMD-44729">
    <admin>
        <current_status>
            <date>2025-10-01</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <revision_history>
            <revision version="1.0" date="2025-05-07">
                <change_list>
                    <model>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </model>
                    <metadata>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </metadata>
                    <half_map part="1">
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </half_map>
                    <half_map part="2">
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </half_map>
                    <image>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </image>
                    <primary_map>
                        <revision_type>INITIAL_RELEASE</revision_type>
                        <provider>REPOSITORY</provider>
                    </primary_map>
                </change_list>
            </revision>
            <revision version="1.1" date="2025-10-01">
                <change_list>
                    <model>
                        <revision_group>DATABASE_REFERENCES</revision_group>
                        <categories>
                            <category>citation</category>
                            <category>citation_author</category>
                            <category>em_admin</category>
                        </categories>
                        <items>
                            <item>_citation.country</item>
                            <item>_citation.journal_abbrev</item>
                            <item>_citation.journal_id_ASTM</item>
                            <item>_citation.journal_id_CSD</item>
                            <item>_citation.journal_id_ISSN</item>
                            <item>_citation.journal_volume</item>
                            <item>_citation.pdbx_database_id_DOI</item>
                            <item>_citation.pdbx_database_id_PubMed</item>
                            <item>_citation.title</item>
                            <item>_citation.year</item>
                            <item>_em_admin.last_update</item>
                        </items>
                    </model>
                </change_list>
            </revision>
        </revision_history>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2024-05-02</deposition>
            <header_release>2025-05-07</header_release>
            <map_release>2025-05-07</map_release>
            <update>2025-10-01</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Cryo-EM structure of rhesus antibody 6070-a.01 in complex with HIV-1 Env trimer Q23.17 MD39</title>
        <authors_list>
            <author>Roark RS</author>
            <author>Shapiro L</author>
            <author>Kwong PD</author>
        </authors_list>
        <keywords>Neutralizing antibody, HIV-1 V2 apex, SHIV-elicited, Viral protein, IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM complex</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0003-0586-103X" order="1">Roark RS</author>
                    <author ORCID="0000-0002-2812-8263" order="2">Habib R</author>
                    <author ORCID="0000-0002-3775-6560" order="3">Gorman J</author>
                    <author ORCID="0000-0001-7231-8219" order="4">Li H</author>
                    <author ORCID="0000-0002-9393-3074" order="5">Connell AJ</author>
                    <author ORCID="0000-0003-2973-2101" order="6">Bonsignori M</author>
                    <author ORCID="0000-0001-5357-660X" order="7">Guo Y</author>
                    <author ORCID="0000-0002-3513-0222" order="8">Hogarty MP</author>
                    <author ORCID="0000-0003-0805-1331" order="9">Olia AS</author>
                    <author ORCID="0009-0005-7602-9461" order="10">Sowers KJ</author>
                    <author ORCID="0000-0002-0165-1513" order="11">Zhang B</author>
                    <author ORCID="0009-0003-7518-6487" order="12">Bibollet-Ruche F</author>
                    <author ORCID="0000-0002-2065-2773" order="13">Bylund T</author>
                    <author ORCID="0000-0003-2966-994X" order="14">Callaghan S</author>
                    <author ORCID="0009-0007-9261-3830" order="15">Carey JW</author>
                    <author ORCID="0000-0002-9081-7561" order="16">Cerutti G</author>
                    <author ORCID="0000-0002-3671-6452" order="17">Harris DR</author>
                    <author ORCID="0000-0003-4692-3516" order="18">He W</author>
                    <author ORCID="0000-0001-5721-0787" order="19">Lewis E</author>
                    <author ORCID="0009-0005-0346-3232" order="20">Liu T</author>
                    <author ORCID="0000-0001-7123-4902" order="21">Mason RD</author>
                    <author ORCID="0009-0009-7182-2355" order="22">Qiao Y</author>
                    <author ORCID="0009-0003-5069-504X" order="23">Park Y</author>
                    <author ORCID="0000-0002-1742-9255" order="24">Rando JM</author>
                    <author ORCID="0000-0001-7751-2934" order="25">Singh A</author>
                    <author ORCID="0009-0000-6233-5357" order="26">Wolff JJ</author>
                    <author ORCID="0000-0002-3656-4014" order="27">Lei QP</author>
                    <author order="28">Louder MK</author>
                    <author ORCID="0000-0001-8837-7520" order="29">Andrabi R</author>
                    <author ORCID="0000-0002-5731-3054" order="30">Doria-Rose NA</author>
                    <author ORCID="0000-0001-7399-7954" order="31">Saunders KO</author>
                    <author ORCID="0000-0001-6444-3562" order="32">Seaman MS</author>
                    <author ORCID="0000-0002-7643-9023" order="33">Haynes BF</author>
                    <author ORCID="0000-0002-0527-3804" order="34">Kulp DW</author>
                    <author ORCID="0000-0002-5293-4695" order="35">Mascola JR</author>
                    <author ORCID="0000-0001-7448-7040" order="36">Roederer M</author>
                    <author ORCID="0000-0002-3795-4348" order="37">Pierson TC</author>
                    <author ORCID="0000-0002-3253-3309" order="38">Sheng Z</author>
                    <author ORCID="0000-0002-9400-9887" order="39">Hahn BH</author>
                    <author ORCID="0000-0002-2338-4532" order="40">Shaw GM</author>
                    <author ORCID="0000-0003-3560-232X" order="41">Kwong PD</author>
                    <author ORCID="0000-0001-9943-8819" order="42">Shapiro L</author>
                    <title>Structural and genetic basis of HIV-1 envelope V2 apex recognition by rhesus broadly neutralizing antibodies.</title>
                    <journal_abbreviation>J.Exp.Med.</journal_abbreviation>
                    <country>US</country>
                    <volume>222</volume>
                    <year>2025</year>
                    <external_references type="PUBMED">40824240</external_references>
                    <external_references type="DOI">doi:10.1084/jem.20250638</external_references>
                    <external_references type="ISSN">1540-9538</external_references>
                    <external_references type="CSD">0774</external_references>
                    <external_references type="ASTM">JEMEAV</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>9bnl</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
        <other_db_list>
            <db_reference>
                <db_name>EMDB</db_name>
                <accession_id>EMD-44729</accession_id>
                <content_type>associated EM volume</content_type>
                <details>Cryo-EM structure of rhesus antibody 6070-a.01 in complex with  HIV-1 Env Q23.17 MD39 SOSIP</details>
            </db_reference>
        </other_db_list>
    </crossreferences>
    <sample>
        <name>Complex of 6070-a.01 with HIV-1 Q23.17 envelope trimer</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Complex of 6070-a.01 with HIV-1 Q23.17 envelope trimer</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9544">Macaca mulatta</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Envelope glycoprotein Gp120</name>
                <natural_source database="NCBI">
                    <organism ncbi="11676">Human immunodeficiency virus 1</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.052382374999999995</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>NLWVTVYYGVPVWRDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHEDIISLW
DQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREGLKNCSFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTS
AITQACPKVSFEPIPIHYCTPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNIIIRSENITN
NAKIIIVQLVQPVTIKCIRPNNNTVKSIRIGPGQAFYYTGDIIGDIRQAHCNVTRSRWNKTLQEVAEKLRTYFGNKTIIF
ANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQAMYAPPIPG
VIKCESNITGLLLTRDGGKDNNVNETFRPGGSDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRV</string>
                    <external_references type="UNIPROTKB">O55774</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Envelope glycoprotein Gp41</name>
                <natural_source database="NCBI">
                    <organism ncbi="11676">Human immunodeficiency virus 1</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.016291531999999997</theoretical>
                </molecular_weight>
                <number_of_copies>3</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>LGFLGAAGSTMGAASITLTVQARNLLSGIVQQQNNLLRAIEAQQHLLKLTHWGIKQLQARVLAVEHYLRDQQLLGIWGCS
GKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEINNYTQLIYRLIEESQNQQEKNEKELL</string>
                    <external_references type="UNIPROTKB">O55774</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>6070-a.01 heavy chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9544">Macaca mulatta</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.014704397000000001</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>QVTLKESGPALVKPTQTLTLTCTFSGFSLSTSGMAVGWIRQPPGKALEWLANIYWDGDTYYSTSLKSRLTISKDTSKNQV
ALKMTNMDPVDTATYFCARGEESFYEDD(TYS)GQMEWLHSFDAWGQGLRVTVSS</string>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name>6070-a.01 light chain</name>
                <natural_source database="NCBI">
                    <organism ncbi="9544">Macaca mulatta</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.011548873999999999</theoretical>
                </molecular_weight>
                <number_of_copies>1</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>DIQMTQSPPSLSASIGDRVTITCRASQGISNYLAWYQQKPGKAPKRLVYDASTLQGGVPSRFSGSGSGTYFSLTISSLQP
EDFATYYCLQHNSHPLTFGGGTKVDIK</string>
                </sequence>
            </protein_or_peptide>
            <ligand macromolecule_id="10">
                <name>2-acetamido-2-deoxy-beta-D-glucopyranose</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000221208</theoretical>
                </molecular_weight>
                <number_of_copies>20</number_of_copies>
                <formula>NAG</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">0.8</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.0</nominal_defocus_max>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K3 (6k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">58.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <type>NONE</type>
                </ctf_correction>
                <startup_model type_of_model="PDB ENTRY">
                    <pdb_model>
                        <pdb_id>7LLK</pdb_id>
                    </pdb_model>
                </startup_model>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">3.6</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>62547</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="226493">
        <file>emd_44729.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>384</col>
            <row>384</row>
            <sec>384</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>384</x>
            <y>384</y>
            <z>384</z>
        </spacing>
        <cell>
            <a units="Å">318.72</a>
            <b units="Å">318.72</b>
            <c units="Å">318.72</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.11504728</minimum>
            <maximum>0.38108554</maximum>
            <average>0.0015629113</average>
            <std>0.015050944</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">0.83</x>
            <y units="Å">0.83</y>
            <z units="Å">0.83</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.1</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-44729::::</label>
    </map>
    <interpretation>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="226493">
                <file>emd_44729_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>384</col>
                    <row>384</row>
                    <sec>384</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>384</x>
                    <y>384</y>
                    <z>384</z>
                </spacing>
                <cell>
                    <a units="Å">318.72</a>
                    <b units="Å">318.72</b>
                    <c units="Å">318.72</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.4019399</minimum>
                    <maximum>0.6423811</maximum>
                    <average>0.0013379231</average>
                    <std>0.048765272</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.83</x>
                    <y units="Å">0.83</y>
                    <z units="Å">0.83</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-44729::::</label>
            </half_map>
            <half_map format="CCP4" size_kbytes="226493">
                <file>emd_44729_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>384</col>
                    <row>384</row>
                    <sec>384</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>384</x>
                    <y>384</y>
                    <z>384</z>
                </spacing>
                <cell>
                    <a units="Å">318.72</a>
                    <b units="Å">318.72</b>
                    <c units="Å">318.72</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.3948934</minimum>
                    <maximum>0.6228337</maximum>
                    <average>0.00135479</average>
                    <std>0.04883175</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">0.83</x>
                    <y units="Å">0.83</y>
                    <z units="Å">0.83</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-44729::::</label>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
