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PDBj Snapshot Archive是PDB Archive的快照。通常我們每年在年初創建它。但我們也會在進行重大更新時做到這一點。
我們僅使用 ftp 和 rsync 提供PDB Archive的快照。一些使用示例如下所示：
| 文件名 v | 最後修改時間 | 文件大小 | |
|---|---|---|---|
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rsyncSnapshots.sh | 2024-01-01 14:00 | 7.6K |
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README | 2024-01-01 14:00 | 8.1K |
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all_xml_files_20240101 | 2020-07-04 12:41 | - |
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all_xml_files_20230102 | 2020-07-04 12:41 | - |
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all_xml_files_20220103 | 2020-07-04 12:41 | - |
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all_xml_files_20210105 | 2021-01-06 00:11 | - |
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all_xml_files_20200722 | 2012-01-03 11:26 | - |
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all_xml_files_20200101 | 2012-01-03 11:26 | - |
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all_xml_files_20190101 | 2012-01-03 11:26 | - |
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all_xml_files_20180101 | 2012-01-03 11:26 | - |
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all_xml_files_20170710 | 2012-01-03 11:26 | - |
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all_xml_files_20170101 | 2012-01-03 11:26 | - |
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all_xml_files_20160101 | 2012-01-03 11:26 | - |
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all_xml_files_20150102 | 2012-01-03 11:26 | - |
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all_xml_files_20141203 | 2012-01-03 11:26 | - |
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all_xml_files_20140102 | 2014-01-08 08:31 | - |
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all_xml_files_20130101 | 2012-01-03 11:26 | - |
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all_xml_files_20120102 | 2011-07-06 19:07 | - |
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all_xml_files_20110707 | 2007-04-25 11:39 | - |
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all_xml_files_20110103 | 2007-04-25 11:39 | - |
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all_xml_files_20100104 | 2007-04-25 11:39 | - |
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all_xml_files_20090316 | 2007-04-25 11:39 | - |
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all_xml_files_20090105 | 2007-04-25 11:39 | - |
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all_xml_files_20080107 | 2007-04-25 11:39 | - |
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all_xml_files_20070731 | 2005-11-14 21:08 | - |
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all_xml_files_20070102 | 2005-11-14 21:08 | - |
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all_xml_files_20060103 | 2005-11-14 21:08 | - |
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all_pdb_files_20240101 | 2020-07-04 12:41 | - |
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all_pdb_files_20230102 | 2020-07-04 12:41 | - |
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all_pdb_files_20220103 | 2020-07-04 12:41 | - |
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all_pdb_files_20210105 | 2020-07-04 12:41 | - |
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all_pdb_files_20200722 | 2007-04-25 11:39 | - |
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all_pdb_files_20200101 | 2007-04-25 11:39 | - |
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all_pdb_files_20190101 | 2007-04-25 11:39 | - |
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all_pdb_files_20180101 | 2007-04-25 11:39 | - |
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all_pdb_files_20170710 | 2007-04-25 11:39 | - |
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all_pdb_files_20170101 | 2007-04-25 11:39 | - |
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all_pdb_files_20160101 | 2007-04-25 11:39 | - |
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all_pdb_files_20150102 | 2007-04-25 11:39 | - |
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all_pdb_files_20141203 | 2007-04-25 11:39 | - |
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all_pdb_files_20140102 | 2007-04-25 11:39 | - |
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all_pdb_files_20130101 | 2007-04-25 11:39 | - |
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all_pdb_files_20120102 | 2007-04-25 11:39 | - |
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all_pdb_files_20110707 | 2007-04-25 11:39 | - |
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all_pdb_files_20110103 | 2007-04-25 11:39 | - |
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all_pdb_files_20100104 | 2007-04-25 11:39 | - |
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all_pdb_files_20090316 | 2007-04-25 11:39 | - |
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all_pdb_files_20090105 | 2007-04-25 11:39 | - |
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all_pdb_files_20080107 | 2007-04-25 11:39 | - |
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all_pdb_files_20070731 | 2005-11-14 18:23 | - |
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all_pdb_files_20070102 | 2005-11-14 18:23 | - |
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all_pdb_files_20060103 | 2005-11-14 18:23 | - |
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all_pdb_files_20050106 | 2004-12-20 16:34 | - |
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all_mmcif_files_20240101 | 2020-07-04 12:41 | - |
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all_mmcif_files_20230102 | 2020-07-04 12:41 | - |
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all_mmcif_files_20220103 | 2020-07-04 12:41 | - |
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all_mmcif_files_20210105 | 2020-07-04 12:41 | - |
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all_mmcif_files_20200722 | 2011-11-22 14:23 | - |
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all_mmcif_files_20200101 | 2011-11-22 14:23 | - |
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all_mmcif_files_20190101 | 2019-01-02 00:34 | - |
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all_mmcif_files_20180101 | 2011-11-22 14:23 | - |
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all_mmcif_files_20170710 | 2011-11-22 14:23 | - |
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all_mmcif_files_20170101 | 2011-11-22 14:23 | - |
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all_mmcif_files_20160101 | 2011-11-22 14:23 | - |
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all_mmcif_files_20150102 | 2011-11-22 14:23 | - |
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all_mmcif_files_20141203 | 2011-11-22 14:23 | - |
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all_mmcif_files_20140102 | 2014-01-08 08:30 | - |
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all_mmcif_files_20130101 | 2011-11-22 14:23 | - |
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all_mmcif_files_20120102 | 2011-11-22 14:23 | - |
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all_mmcif_files_20110707 | 2007-04-25 11:39 | - |
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all_mmcif_files_20110103 | 2007-04-25 11:39 | - |
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all_mmcif_files_20100104 | 2007-04-25 11:39 | - |
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all_mmcif_files_20090316 | 2007-04-25 11:39 | - |
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all_mmcif_files_20090105 | 2007-04-25 11:39 | - |
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all_mmcif_files_20080107 | 2007-04-25 11:39 | - |
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all_mmcif_files_20070731 | 2005-11-14 20:56 | - |
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all_mmcif_files_20070102 | 2005-11-14 20:56 | - |
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all_mmcif_files_20060103 | 2005-11-14 20:56 | - |
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all_mmcif_files_20050106 | 2004-12-20 19:27 | - |
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20240101 | 2023-11-24 07:49 | - |
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20230102 | 2022-11-29 05:50 | - |
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20220103 | 2021-12-10 06:55 | - |
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20210105 | 2020-12-15 02:08 | - |
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20200916 | 2020-09-16 11:46 | - |
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20200722 | 2020-07-22 23:26 | - |
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20200610 | 2020-06-08 04:42 | - |
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20200101 | 2019-12-20 05:48 | - |
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20190101 | 2018-12-18 03:04 | - |
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20180321 | 2018-03-22 01:25 | - |
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20180101 | 2017-12-15 01:48 | - |
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20170710 | 2017-07-13 07:12 | - |
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20170308 | 2017-03-08 17:09 | - |
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20170101 | 2012-08-22 18:08 | - |
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20160302 | 2016-03-02 15:02 | - |
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20160101 | 2012-08-22 18:08 | - |
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20150102 | 2012-08-22 18:08 | - |
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20141203 | 2012-08-22 18:08 | - |
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20140102 | 2012-08-22 18:08 | - |
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20130101 | 2012-08-22 18:08 | - |
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20120102 | 2012-01-02 09:33 | - |
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20110707 | 2011-07-07 21:55 | - |
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20110103 | 2011-01-04 17:44 | - |
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20100104 | 2010-01-05 17:20 | - |
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20090316 | 2009-03-16 20:27 | - |
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20090105 | 2009-01-07 00:34 | - |
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20080107 | 2008-01-08 22:26 | - |
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20070731 | 2007-07-31 21:59 | - |
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20070102 | 2006-04-20 03:39 | - |
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20060103 | 2018-02-18 23:56 | - |
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20050106 | 2018-02-18 23:55 | - |
獲取 PDBx/mmCIF 文件中 PDBID 中間兩位為“00”的條目。
$ ftp snapshots.pdbj.org Connected to snapshots.pdbj.org. 220 Welcome to PDB Snapshot Archive FTP service. Name (snapshots.pdbj.org:user): ftp 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd 20220103/pub/pdb/data/structures/divided/mmCIF/00 250 Directory successfully changed. ftp> !mkdir 00 ftp> lcd 00 Local directory now: /home/user/00 ftp> mget * mget 100d.cif.gz [anpqy?]? a Prompting off for duration of mget. 229 Entering Extended Passive Mode (|||17423|) 150 Opening BINARY mode data connection for 100d.cif.gz (20910 bytes). 100% |*******************************************************| 20910 61.54 MiB/s 00:00 ETA 226 Transfer complete. 20910 bytes received in 00:00 (34.50 MiB/s) 229 Entering Extended Passive Mode (|||44627|) 150 Opening BINARY mode data connection for 200d.cif.gz (14772 bytes). 100% |*******************************************************| 14772 148.29 MiB/s 00:00 ETA 226 Transfer complete. 14772 bytes received in 00:00 (51.41 MiB/s) 229 Entering Extended Passive Mode (|||31259|) 150 Opening BINARY mode data connection for 200l.cif.gz (44370 bytes). 100% |*******************************************************| 44370 66.11 MiB/s 00:00 ETA 226 Transfer complete. 44370 bytes received in 00:00 (50.67 MiB/s) 229 Entering Extended Passive Mode (|||57306|) 150 Opening BINARY mode data connection for 300d.cif.gz (30277 bytes). 100% |*******************************************************| 30277 47.88 MiB/s 00:00 ETA 226 Transfer complete. 30277 bytes received in 00:00 (24.76 MiB/s) 229 Entering Extended Passive Mode (|||50634|) 150 Opening BINARY mode data connection for 400d.cif.gz (13492 bytes). 100% |*******************************************************| 13492 84.65 MiB/s 00:00 ETA 226 Transfer complete. 13492 bytes received in 00:00 (38.63 MiB/s) ftp> bye 221 Goodbye. $ ls -l 00 total 264 -rw-r--r-- 1 user user 20910 4 21 2017 100d.cif.gz -rw-r--r-- 1 user user 14772 4 21 2017 200d.cif.gz -rw-r--r-- 1 user user 44370 11 25 2017 200l.cif.gz -rw-r--r-- 1 user user 30277 4 21 2017 300d.cif.gz -rw-r--r-- 1 user user 13492 3 3 2018 400d.cif.gz
獲取入口點列表。
$ rsync -az snapshots.pdbj.org:: all Entire Snapshots archive 20050106 January 6, 2005 snapshot 20060103 January 3, 2006 snapshot 20070102 January 2, 2007 snapshot ...
獲取入口點"20050106"中的README文件到本地當前目錄。
$ rsync -az snapshots.pdbj.org::20050106 .
Get the README file in the entry point "20050106" to the local current directory.
$ rsync -az snapshots.pdbj.org::20050106/README .